Go ahead and cut out the rot and weld in a piece of metal. Don't worry about the holes. If you want drain holes in the floor then take a metal cutting hole saw and put a new hole in there. Usually those holes aren't neccessary though.
Z man of Washington
1978 black pearl show car-retired, I bought it new
1983 zx turbo daily driver, modified, 3rd owner
1970 240 #23 being restored
1970 240 #638 driver
1973 240 roadster being built
about 70+ other z's & zx's
Recent inventory count was 92 all total
www.zspecialties.com
www.datsunstore.com
www.zman@zspecialties.com
1-800-518-5480